你们要的干货与工具——假基因的基本介绍和数据库

你们要的干货与工具——基因的基本介绍和数据库
今天我们先介绍一个概念——假基因:
Pseudogenes are segments of DNA that are related to real genes. 
Pseudogenes are usually characterized by a combination of homology to a known gene and loss of some functionality. That is, although every pseudogene has a DNA sequence that is similar to some functional gene, they are usually unable to produce functional final protein products
Pseudogenes have lost at least some functionality, relative to the complete gene, in cellular gene expression or protein-coding ability.
Although not fully functional, pseudogenes may be functional, similar to other kinds of noncoding DNA, which can perform regulatory functions. The 'pseudo' in 'pseudogene' implies a variation in sequence relative to the parent coding gene, but does not necessarily indicate pseudo-function. 
Despite being non-coding, many pseudogenes have important roles in normal physiology and abnormal pathology.
这里主要说了几个意思:假基因与“真(母)基因”在结构上可能不同,导致不能翻译真(母)基因的蛋白;但假基因也可能是有功能的,其可能以类似非编码RNA的形式起到调控作用。比如在Pseudogene in cancer: real functions and promising signature.J Med Genet. 2015 Jan;52(1):17-24. 这篇综述中就总结了肿瘤中的假基因分类、功能及研究意义:
基因调控网络
The origin and classification of pseudogene
Functions of pseudogenic RNA
假基因RNA的功能:(A)假基因的反义RNA与真(母)基因(parental)sense mRNA结
合减缓其翻译;(B-D) 假基因RNA产生Endo-siRNAs;(E)假基因RNA作为ceRNA调控靶基因;(F)假基因RNA通过RNA结合蛋白或者翻译机制调控RNA表达或者蛋白翻译。
Functions of pseudogenic protein.
假基因通过与真(母)基因蛋白互作或者作为抗原肽发挥功能。
由于假基因的英文单词为pseudogene,所以很多假基因的名字常常以真基因名+P(即pse
udogene)结尾,比如PTEN基因的假基因PTENP1(phosphatase and tensin homolog pseudogene 1),就有很多文章报道调控“母基因”PTEN的表达:
1.Pseudogene PTENP1 Suppresses Gastric Cancer Progression by Modulating PTEN.Anticancer Agents Med Chem. 2016;16(4):456-64.

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标签:假基因   调控   基因   蛋白
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